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( A ) Proximity labeling of IRE1α. HEK293 cells expressed <t>S1R-APEX2</t> and Sec61β-APEX2 or APEX2-KDEL as controls. Cells were incubated with biotin-phenol, and proteins were labeled by a 1 min addition of H 2 O 2 . Biotinylated proteins were pulled down and analyzed by western blot. ( B ) Western blot analysis of lysates prepared from control HEK293 cells, S1R KO HEK293 cells, and both cell lines transfected with S1R-6His construct as indicated. ( C ) Time-dependence of the thapsigargin (Tg)-induced IRE1α response in WT and S1R KO HEK293 cells. Western blot is representative of n = 3 independent experiments. ( D ) Quantification results of the western blot shown above. p-IRE1α levels were normalized to the total level of IRE1α and plotted as mean (solid line) ± SEM (shaded) from n = 3 independent experiments for WT (black) and S1R KO cells (red). ( E ) Quantification results for area under the curve of the Tg-induced p-IRE1α response. p-value=0.015 based on t-test. ( F ) Quantification results of the western blot results for XBP1s. Intensities of protein bands were normalized to tubulin and plotted as mean ± SEM from n = 3 independent experiments for WT (black) and S1R KO cells (red).
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( A ) Proximity labeling of IRE1α. HEK293 cells expressed <t>S1R-APEX2</t> and Sec61β-APEX2 or APEX2-KDEL as controls. Cells were incubated with biotin-phenol, and proteins were labeled by a 1 min addition of H 2 O 2 . Biotinylated proteins were pulled down and analyzed by western blot. ( B ) Western blot analysis of lysates prepared from control HEK293 cells, S1R KO HEK293 cells, and both cell lines transfected with S1R-6His construct as indicated. ( C ) Time-dependence of the thapsigargin (Tg)-induced IRE1α response in WT and S1R KO HEK293 cells. Western blot is representative of n = 3 independent experiments. ( D ) Quantification results of the western blot shown above. p-IRE1α levels were normalized to the total level of IRE1α and plotted as mean (solid line) ± SEM (shaded) from n = 3 independent experiments for WT (black) and S1R KO cells (red). ( E ) Quantification results for area under the curve of the Tg-induced p-IRE1α response. p-value=0.015 based on t-test. ( F ) Quantification results of the western blot results for XBP1s. Intensities of protein bands were normalized to tubulin and plotted as mean ± SEM from n = 3 independent experiments for WT (black) and S1R KO cells (red).
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( A ) Proximity labeling of IRE1α. HEK293 cells expressed <t>S1R-APEX2</t> and Sec61β-APEX2 or APEX2-KDEL as controls. Cells were incubated with biotin-phenol, and proteins were labeled by a 1 min addition of H 2 O 2 . Biotinylated proteins were pulled down and analyzed by western blot. ( B ) Western blot analysis of lysates prepared from control HEK293 cells, S1R KO HEK293 cells, and both cell lines transfected with S1R-6His construct as indicated. ( C ) Time-dependence of the thapsigargin (Tg)-induced IRE1α response in WT and S1R KO HEK293 cells. Western blot is representative of n = 3 independent experiments. ( D ) Quantification results of the western blot shown above. p-IRE1α levels were normalized to the total level of IRE1α and plotted as mean (solid line) ± SEM (shaded) from n = 3 independent experiments for WT (black) and S1R KO cells (red). ( E ) Quantification results for area under the curve of the Tg-induced p-IRE1α response. p-value=0.015 based on t-test. ( F ) Quantification results of the western blot results for XBP1s. Intensities of protein bands were normalized to tubulin and plotted as mean ± SEM from n = 3 independent experiments for WT (black) and S1R KO cells (red).
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( A ) Proximity labeling of IRE1α. HEK293 cells expressed <t>S1R-APEX2</t> and Sec61β-APEX2 or APEX2-KDEL as controls. Cells were incubated with biotin-phenol, and proteins were labeled by a 1 min addition of H 2 O 2 . Biotinylated proteins were pulled down and analyzed by western blot. ( B ) Western blot analysis of lysates prepared from control HEK293 cells, S1R KO HEK293 cells, and both cell lines transfected with S1R-6His construct as indicated. ( C ) Time-dependence of the thapsigargin (Tg)-induced IRE1α response in WT and S1R KO HEK293 cells. Western blot is representative of n = 3 independent experiments. ( D ) Quantification results of the western blot shown above. p-IRE1α levels were normalized to the total level of IRE1α and plotted as mean (solid line) ± SEM (shaded) from n = 3 independent experiments for WT (black) and S1R KO cells (red). ( E ) Quantification results for area under the curve of the Tg-induced p-IRE1α response. p-value=0.015 based on t-test. ( F ) Quantification results of the western blot results for XBP1s. Intensities of protein bands were normalized to tubulin and plotted as mean ± SEM from n = 3 independent experiments for WT (black) and S1R KO cells (red).
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( A ) Proximity labeling of IRE1α. HEK293 cells expressed S1R-APEX2 and Sec61β-APEX2 or APEX2-KDEL as controls. Cells were incubated with biotin-phenol, and proteins were labeled by a 1 min addition of H 2 O 2 . Biotinylated proteins were pulled down and analyzed by western blot. ( B ) Western blot analysis of lysates prepared from control HEK293 cells, S1R KO HEK293 cells, and both cell lines transfected with S1R-6His construct as indicated. ( C ) Time-dependence of the thapsigargin (Tg)-induced IRE1α response in WT and S1R KO HEK293 cells. Western blot is representative of n = 3 independent experiments. ( D ) Quantification results of the western blot shown above. p-IRE1α levels were normalized to the total level of IRE1α and plotted as mean (solid line) ± SEM (shaded) from n = 3 independent experiments for WT (black) and S1R KO cells (red). ( E ) Quantification results for area under the curve of the Tg-induced p-IRE1α response. p-value=0.015 based on t-test. ( F ) Quantification results of the western blot results for XBP1s. Intensities of protein bands were normalized to tubulin and plotted as mean ± SEM from n = 3 independent experiments for WT (black) and S1R KO cells (red).

Journal: eLife

Article Title: The role of sigma 1 receptor in organization of endoplasmic reticulum signaling microdomains

doi: 10.7554/eLife.65192

Figure Lengend Snippet: ( A ) Proximity labeling of IRE1α. HEK293 cells expressed S1R-APEX2 and Sec61β-APEX2 or APEX2-KDEL as controls. Cells were incubated with biotin-phenol, and proteins were labeled by a 1 min addition of H 2 O 2 . Biotinylated proteins were pulled down and analyzed by western blot. ( B ) Western blot analysis of lysates prepared from control HEK293 cells, S1R KO HEK293 cells, and both cell lines transfected with S1R-6His construct as indicated. ( C ) Time-dependence of the thapsigargin (Tg)-induced IRE1α response in WT and S1R KO HEK293 cells. Western blot is representative of n = 3 independent experiments. ( D ) Quantification results of the western blot shown above. p-IRE1α levels were normalized to the total level of IRE1α and plotted as mean (solid line) ± SEM (shaded) from n = 3 independent experiments for WT (black) and S1R KO cells (red). ( E ) Quantification results for area under the curve of the Tg-induced p-IRE1α response. p-value=0.015 based on t-test. ( F ) Quantification results of the western blot results for XBP1s. Intensities of protein bands were normalized to tubulin and plotted as mean ± SEM from n = 3 independent experiments for WT (black) and S1R KO cells (red).

Article Snippet: Recombinant DNA reagent , Sec61b-APEX2 , This study , , Generated by cloning Sec61b-APEX fusion gene (RRID: Addgene_83411 ) into lentivector.

Techniques: Labeling, Incubation, Western Blot, Transfection, Construct

Journal: eLife

Article Title: The role of sigma 1 receptor in organization of endoplasmic reticulum signaling microdomains

doi: 10.7554/eLife.65192

Figure Lengend Snippet:

Article Snippet: Recombinant DNA reagent , Sec61b-APEX2 , This study , , Generated by cloning Sec61b-APEX fusion gene (RRID: Addgene_83411 ) into lentivector.

Techniques: Generated, Selection, Isolation, Recombinant, Plasmid Preparation, Mutagenesis, Construct, Clone Assay, Sequencing, Software